VTK  9.1.0
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
vtkMoleculeMapper Class Reference

Mapper that draws vtkMolecule objects. More...

#include <vtkMoleculeMapper.h>

Inheritance diagram for vtkMoleculeMapper:
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Collaboration diagram for vtkMoleculeMapper:
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Public Types

enum  { CovalentRadius = 0 , VDWRadius , UnitRadius , CustomArrayRadius }
 
enum  { SingleColor = 0 , DiscreteByAtom }
 
typedef vtkMapper Superclass
 
- Public Types inherited from vtkMapper
typedef vtkAbstractMapper3D Superclass
 
- Public Types inherited from vtkAbstractMapper3D
typedef vtkAbstractMapper Superclass
 
- Public Types inherited from vtkAbstractMapper
typedef vtkAlgorithm Superclass
 
- Public Types inherited from vtkAlgorithm
enum  DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION }
 Values used for setting the desired output precision for various algorithms. More...
 
typedef vtkObject Superclass
 

Public Member Functions

virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkMoleculeMapperNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
void UseBallAndStickSettings ()
 Set ivars to default ball-and-stick settings.
 
void UseVDWSpheresSettings ()
 Set ivars to default van der Waals spheres settings.
 
void UseLiquoriceStickSettings ()
 Set ivars to default liquorice stick settings.
 
void UseFastSettings ()
 Set ivars to use fast settings that may be useful for rendering extremely large molecules where the overall shape is more important than the details of the atoms/bond.
 
virtual void SetMapScalars (bool map)
 Helper method to set ScalarMode on both AtomGlyphMapper and BondGlyphMapper.
 
vtkPeriodicTableGetPeriodicTable ()
 Accessor to internal structure.
 
void SetInputData (vtkMolecule *in)
 Get/Set the input vtkMolecule.
 
vtkMoleculeGetInput ()
 Get/Set the input vtkMolecule.
 
virtual bool GetRenderAtoms ()
 Get/Set whether or not to render atoms.
 
virtual void SetRenderAtoms (bool)
 Get/Set whether or not to render atoms.
 
virtual void RenderAtomsOn ()
 Get/Set whether or not to render atoms.
 
virtual void RenderAtomsOff ()
 Get/Set whether or not to render atoms.
 
virtual bool GetRenderBonds ()
 Get/Set whether or not to render bonds.
 
virtual void SetRenderBonds (bool)
 Get/Set whether or not to render bonds.
 
virtual void RenderBondsOn ()
 Get/Set whether or not to render bonds.
 
virtual void RenderBondsOff ()
 Get/Set whether or not to render bonds.
 
virtual bool GetRenderLattice ()
 Get/Set whether or not to render the unit cell lattice, if present.
 
virtual void SetRenderLattice (bool)
 Get/Set whether or not to render the unit cell lattice, if present.
 
virtual void RenderLatticeOn ()
 Get/Set whether or not to render the unit cell lattice, if present.
 
virtual void RenderLatticeOff ()
 Get/Set whether or not to render the unit cell lattice, if present.
 
virtual int GetAtomicRadiusType ()
 Get/Set the type of radius used to generate the atoms.
 
virtual void SetAtomicRadiusType (int)
 Get/Set the type of radius used to generate the atoms.
 
const char * GetAtomicRadiusTypeAsString ()
 Get/Set the type of radius used to generate the atoms.
 
void SetAtomicRadiusTypeToCovalentRadius ()
 Get/Set the type of radius used to generate the atoms.
 
void SetAtomicRadiusTypeToVDWRadius ()
 Get/Set the type of radius used to generate the atoms.
 
void SetAtomicRadiusTypeToUnitRadius ()
 Get/Set the type of radius used to generate the atoms.
 
void SetAtomicRadiusTypeToCustomArrayRadius ()
 Get/Set the type of radius used to generate the atoms.
 
virtual float GetAtomicRadiusScaleFactor ()
 Get/Set the uniform scaling factor applied to the atoms.
 
virtual void SetAtomicRadiusScaleFactor (float)
 Get/Set the uniform scaling factor applied to the atoms.
 
virtual bool GetUseMultiCylindersForBonds ()
 Get/Set whether multicylinders will be used to represent multiple bonds.
 
virtual void SetUseMultiCylindersForBonds (bool)
 Get/Set whether multicylinders will be used to represent multiple bonds.
 
virtual void UseMultiCylindersForBondsOn ()
 Get/Set whether multicylinders will be used to represent multiple bonds.
 
virtual void UseMultiCylindersForBondsOff ()
 Get/Set whether multicylinders will be used to represent multiple bonds.
 
virtual int GetBondColorMode ()
 Get/Set the method by which bonds are colored.
 
virtual void SetBondColorMode (int)
 Get/Set the method by which bonds are colored.
 
void SetBondColorModeToSingleColor ()
 Get/Set the method by which bonds are colored.
 
void SetBondColorModeToDiscreteByAtom ()
 Get/Set the method by which bonds are colored.
 
const char * GetBondColorModeAsString ()
 Get/Set the method by which bonds are colored.
 
virtual int GetAtomColorMode ()
 Get/Set the method by which atoms are colored.
 
virtual void SetAtomColorMode (int)
 Get/Set the method by which atoms are colored.
 
virtual unsigned char * GetAtomColor ()
 Get/Set the color of the atoms as an rgb tuple.
 
virtual void GetAtomColor (unsigned char &, unsigned char &, unsigned char &)
 Get/Set the color of the atoms as an rgb tuple.
 
virtual void GetAtomColor (unsigned char[3])
 Get/Set the color of the atoms as an rgb tuple.
 
virtual void SetAtomColor (unsigned char, unsigned char, unsigned char)
 Get/Set the color of the atoms as an rgb tuple.
 
virtual void SetAtomColor (unsigned char[3])
 Get/Set the color of the atoms as an rgb tuple.
 
virtual unsigned char * GetBondColor ()
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void GetBondColor (unsigned char &, unsigned char &, unsigned char &)
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void GetBondColor (unsigned char[3])
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void SetBondColor (unsigned char, unsigned char, unsigned char)
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void SetBondColor (unsigned char[3])
 Get/Set the color of the bonds as an rgb tuple.
 
virtual float GetBondRadius ()
 Get/Set the radius of the bond cylinders.
 
virtual void SetBondRadius (float)
 Get/Set the radius of the bond cylinders.
 
virtual unsigned char * GetLatticeColor ()
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void GetLatticeColor (unsigned char &, unsigned char &, unsigned char &)
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void GetLatticeColor (unsigned char[3])
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void SetLatticeColor (unsigned char, unsigned char, unsigned char)
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void SetLatticeColor (unsigned char[3])
 Get/Set the color of the bonds as an rgb tuple.
 
virtual void GetSelectedAtomsAndBonds (vtkSelection *selection, vtkIdTypeArray *atomIds, vtkIdTypeArray *bondIds)
 Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
 
virtual void GetSelectedAtoms (vtkSelection *selection, vtkIdTypeArray *atomIds)
 Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
 
virtual void GetSelectedBonds (vtkSelection *selection, vtkIdTypeArray *bondIds)
 Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
 
void Render (vtkRenderer *, vtkActor *) override
 Reimplemented from base class.
 
void ReleaseGraphicsResources (vtkWindow *) override
 Reimplemented from base class.
 
double * GetBounds () override
 Reimplemented from base class.
 
void GetBounds (double bounds[6]) override
 Reimplemented from base class.
 
int FillInputPortInformation (int port, vtkInformation *info) override
 Reimplemented from base class.
 
bool GetSupportsSelection () override
 Reimplemented from base class.
 
virtual char * GetAtomicRadiusArrayName ()
 Get/Set the atomic radius array name.
 
virtual void SetAtomicRadiusArrayName (const char *)
 Get/Set the atomic radius array name.
 
- Public Member Functions inherited from vtkMapper
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkMapperNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
void ShallowCopy (vtkAbstractMapper *m) override
 Make a shallow copy of this mapper.
 
vtkMTimeType GetMTime () override
 Overload standard modified time function.
 
virtual void Render (vtkRenderer *ren, vtkActor *a)=0
 Method initiates the mapping process.
 
void ReleaseGraphicsResources (vtkWindow *) override
 Release any graphics resources that are being consumed by this mapper.
 
virtual void CreateDefaultLookupTable ()
 Create default lookup table.
 
const char * GetColorModeAsString ()
 Return the method of coloring scalar data.
 
virtual void SetScalarMode (int)
 Control how the filter works with scalar point data and cell attribute data.
 
virtual int GetScalarMode ()
 
void SetScalarModeToDefault ()
 
void SetScalarModeToUsePointData ()
 
void SetScalarModeToUseCellData ()
 
void SetScalarModeToUsePointFieldData ()
 
void SetScalarModeToUseCellFieldData ()
 
void SetScalarModeToUseFieldData ()
 
virtual void SetFieldDataTupleId (vtkIdType)
 
virtual vtkIdType GetFieldDataTupleId ()
 
virtual char * GetArrayName ()
 Set/Get the array name or number and component to color by.
 
virtual void SetArrayName (const char *)
 
virtual int GetArrayId ()
 
virtual void SetArrayId (int)
 
virtual int GetArrayAccessMode ()
 
virtual void SetArrayAccessMode (int)
 
virtual int GetArrayComponent ()
 
virtual void SetArrayComponent (int)
 
const char * GetScalarModeAsString ()
 Return the method for obtaining scalar data.
 
double * GetBounds () override
 Return bounding box (array of six doubles) of data expressed as (xmin,xmax, ymin,ymax, zmin,zmax).
 
void GetBounds (double bounds[6]) override
 Get the bounds for this mapper as (Xmin,Xmax,Ymin,Ymax,Zmin,Zmax).
 
void SetRenderTime (double time)
 This instance variable is used by vtkLODActor to determine which mapper to use.
 
virtual double GetRenderTime ()
 
vtkDataSetGetInput ()
 Get the input as a vtkDataSet.
 
vtkDataSetGetInputAsDataSet ()
 Get the input to this mapper as a vtkDataSet, instead of as a more specialized data type that the subclass may return from GetInput().
 
virtual bool GetSupportsSelection ()
 WARNING: INTERNAL METHOD - NOT INTENDED FOR GENERAL USE DO NOT USE THIS METHOD OUTSIDE OF THE RENDERING PROCESS Used by vtkHardwareSelector to determine if the prop supports hardware selection.
 
virtual void ProcessSelectorPixelBuffers (vtkHardwareSelector *, std::vector< unsigned int > &, vtkProp *)
 allows a mapper to update a selections color buffers Called from a prop which in turn is called from the selector
 
virtual int CanUseTextureMapForColoring (vtkDataObject *input)
 Returns if we can use texture maps for scalar coloring.
 
void ClearColorArrays ()
 Call to force a rebuild of color result arrays on next MapScalars.
 
vtkUnsignedCharArrayGetColorMapColors ()
 Provide read access to the color array.
 
vtkFloatArrayGetColorCoordinates ()
 Provide read access to the color texture coordinate array.
 
vtkImageDataGetColorTextureMap ()
 Provide read access to the color texture array.
 
void SetLookupTable (vtkScalarsToColors *lut)
 Specify a lookup table for the mapper to use.
 
vtkScalarsToColorsGetLookupTable ()
 Specify a lookup table for the mapper to use.
 
virtual void SetScalarVisibility (vtkTypeBool)
 Turn on/off flag to control whether scalar data is used to color objects.
 
virtual vtkTypeBool GetScalarVisibility ()
 Turn on/off flag to control whether scalar data is used to color objects.
 
virtual void ScalarVisibilityOn ()
 Turn on/off flag to control whether scalar data is used to color objects.
 
virtual void ScalarVisibilityOff ()
 Turn on/off flag to control whether scalar data is used to color objects.
 
virtual void SetStatic (vtkTypeBool)
 Turn on/off flag to control whether the mapper's data is static.
 
virtual vtkTypeBool GetStatic ()
 Turn on/off flag to control whether the mapper's data is static.
 
virtual void StaticOn ()
 Turn on/off flag to control whether the mapper's data is static.
 
virtual void StaticOff ()
 Turn on/off flag to control whether the mapper's data is static.
 
virtual void SetColorMode (int)
 default (ColorModeToDefault), unsigned char scalars are treated as colors, and NOT mapped through the lookup table, while everything else is.
 
virtual int GetColorMode ()
 default (ColorModeToDefault), unsigned char scalars are treated as colors, and NOT mapped through the lookup table, while everything else is.
 
void SetColorModeToDefault ()
 default (ColorModeToDefault), unsigned char scalars are treated as colors, and NOT mapped through the lookup table, while everything else is.
 
void SetColorModeToMapScalars ()
 default (ColorModeToDefault), unsigned char scalars are treated as colors, and NOT mapped through the lookup table, while everything else is.
 
void SetColorModeToDirectScalars ()
 default (ColorModeToDefault), unsigned char scalars are treated as colors, and NOT mapped through the lookup table, while everything else is.
 
virtual void SetInterpolateScalarsBeforeMapping (vtkTypeBool)
 By default, vertex color is used to map colors to a surface.
 
virtual vtkTypeBool GetInterpolateScalarsBeforeMapping ()
 By default, vertex color is used to map colors to a surface.
 
virtual void InterpolateScalarsBeforeMappingOn ()
 By default, vertex color is used to map colors to a surface.
 
virtual void InterpolateScalarsBeforeMappingOff ()
 By default, vertex color is used to map colors to a surface.
 
virtual void SetUseLookupTableScalarRange (vtkTypeBool)
 Control whether the mapper sets the lookuptable range based on its own ScalarRange, or whether it will use the LookupTable ScalarRange regardless of it's own setting.
 
virtual vtkTypeBool GetUseLookupTableScalarRange ()
 Control whether the mapper sets the lookuptable range based on its own ScalarRange, or whether it will use the LookupTable ScalarRange regardless of it's own setting.
 
virtual void UseLookupTableScalarRangeOn ()
 Control whether the mapper sets the lookuptable range based on its own ScalarRange, or whether it will use the LookupTable ScalarRange regardless of it's own setting.
 
virtual void UseLookupTableScalarRangeOff ()
 Control whether the mapper sets the lookuptable range based on its own ScalarRange, or whether it will use the LookupTable ScalarRange regardless of it's own setting.
 
virtual void SetScalarRange (double, double)
 Specify range in terms of scalar minimum and maximum (smin,smax).
 
void SetScalarRange (double[2])
 Specify range in terms of scalar minimum and maximum (smin,smax).
 
virtual double * GetScalarRange ()
 Specify range in terms of scalar minimum and maximum (smin,smax).
 
virtual void GetScalarRange (double data[2])
 Specify range in terms of scalar minimum and maximum (smin,smax).
 
void SelectColorArray (int arrayNum)
 When ScalarMode is set to UsePointFieldData or UseCellFieldData, you can specify which array to use for coloring using these methods.
 
void SelectColorArray (const char *arrayName)
 When ScalarMode is set to UsePointFieldData or UseCellFieldData, you can specify which array to use for coloring using these methods.
 
void ColorByArrayComponent (int arrayNum, int component)
 Legacy: These methods used to be used to specify the array component.
 
void ColorByArrayComponent (const char *arrayName, int component)
 Legacy: These methods used to be used to specify the array component.
 
void SetRelativeCoincidentTopologyPolygonOffsetParameters (double factor, double units)
 Used to set the polygon offset values relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void GetRelativeCoincidentTopologyPolygonOffsetParameters (double &factor, double &units)
 Used to set the polygon offset values relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void SetRelativeCoincidentTopologyLineOffsetParameters (double factor, double units)
 Used to set the line offset values relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void GetRelativeCoincidentTopologyLineOffsetParameters (double &factor, double &units)
 Used to set the line offset values relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void SetRelativeCoincidentTopologyPointOffsetParameter (double units)
 Used to set the point offset value relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void GetRelativeCoincidentTopologyPointOffsetParameter (double &units)
 Used to set the point offset value relative to the global Used when ResolveCoincidentTopology is set to PolygonOffset.
 
void GetCoincidentTopologyPolygonOffsetParameters (double &factor, double &units)
 Get the net parameters for handling coincident topology obtained by summing the global values with the relative values.
 
void GetCoincidentTopologyLineOffsetParameters (double &factor, double &units)
 Get the net parameters for handling coincident topology obtained by summing the global values with the relative values.
 
void GetCoincidentTopologyPointOffsetParameter (double &units)
 Get the net parameters for handling coincident topology obtained by summing the global values with the relative values.
 
virtual vtkUnsignedCharArrayMapScalars (double alpha)
 Map the scalars (if there are any scalars and ScalarVisibility is on) through the lookup table, returning an unsigned char RGBA array.
 
virtual vtkUnsignedCharArrayMapScalars (double alpha, int &cellFlag)
 Map the scalars (if there are any scalars and ScalarVisibility is on) through the lookup table, returning an unsigned char RGBA array.
 
virtual vtkUnsignedCharArrayMapScalars (vtkDataSet *input, double alpha)
 Map the scalars (if there are any scalars and ScalarVisibility is on) through the lookup table, returning an unsigned char RGBA array.
 
virtual vtkUnsignedCharArrayMapScalars (vtkDataSet *input, double alpha, int &cellFlag)
 Map the scalars (if there are any scalars and ScalarVisibility is on) through the lookup table, returning an unsigned char RGBA array.
 
virtual bool HasOpaqueGeometry ()
 Some introspection on the type of data the mapper will render used by props to determine if they should invoke the mapper on a specific rendering pass.
 
virtual bool HasTranslucentPolygonalGeometry ()
 Some introspection on the type of data the mapper will render used by props to determine if they should invoke the mapper on a specific rendering pass.
 
virtual vtkSelectionGetSelection ()
 Set/Get selection used to display particular points or cells in a second pass.
 
virtual void SetSelection (vtkSelection *)
 Set/Get selection used to display particular points or cells in a second pass.
 
- Public Member Functions inherited from vtkAbstractMapper3D
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkAbstractMapper3DNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
virtual double * GetBounds ()=0
 Return bounding box (array of six doubles) of data expressed as (xmin,xmax, ymin,ymax, zmin,zmax).
 
virtual void GetBounds (double bounds[6])
 Get the bounds for this mapper as (Xmin,Xmax,Ymin,Ymax,Zmin,Zmax).
 
double GetLength ()
 Return the diagonal length of this mappers bounding box.
 
virtual vtkTypeBool IsARayCastMapper ()
 Is this a ray cast mapper? A subclass would return 1 if the ray caster is needed to generate an image from this mapper.
 
virtual vtkTypeBool IsARenderIntoImageMapper ()
 Is this a "render into image" mapper? A subclass would return 1 if the mapper produces an image by rendering into a software image buffer.
 
void GetClippingPlaneInDataCoords (vtkMatrix4x4 *propMatrix, int i, double planeEquation[4])
 Get the ith clipping plane as a homogeneous plane equation.
 
double * GetCenter ()
 Return the Center of this mapper's data.
 
void GetCenter (double center[3])
 Return the Center of this mapper's data.
 
- Public Member Functions inherited from vtkAbstractMapper
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkAbstractMapperNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
vtkMTimeType GetMTime () override
 Override Modifiedtime as we have added Clipping planes.
 
virtual void ReleaseGraphicsResources (vtkWindow *)
 Release any graphics resources that are being consumed by this mapper.
 
void SetClippingPlanes (vtkPlanes *planes)
 An alternative way to set clipping planes: use up to six planes found in the supplied instance of the implicit function vtkPlanes.
 
virtual void ShallowCopy (vtkAbstractMapper *m)
 Make a shallow copy of this mapper.
 
int GetNumberOfClippingPlanes ()
 Get the number of clipping planes.
 
virtual double GetTimeToDraw ()
 Get the time required to draw the geometry last time it was rendered.
 
void AddClippingPlane (vtkPlane *plane)
 Specify clipping planes to be applied when the data is mapped (at most 6 clipping planes can be specified).
 
void RemoveClippingPlane (vtkPlane *plane)
 Specify clipping planes to be applied when the data is mapped (at most 6 clipping planes can be specified).
 
void RemoveAllClippingPlanes ()
 Specify clipping planes to be applied when the data is mapped (at most 6 clipping planes can be specified).
 
virtual void SetClippingPlanes (vtkPlaneCollection *)
 Get/Set the vtkPlaneCollection which specifies the clipping planes.
 
virtual vtkPlaneCollectionGetClippingPlanes ()
 Get/Set the vtkPlaneCollection which specifies the clipping planes.
 
- Public Member Functions inherited from vtkAlgorithm
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
int HasExecutive ()
 Check whether this algorithm has an assigned executive.
 
vtkExecutiveGetExecutive ()
 Get this algorithm's executive.
 
virtual void SetExecutive (vtkExecutive *executive)
 Set this algorithm's executive.
 
virtual vtkTypeBool ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo)
 Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality.
 
vtkTypeBool ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
 Version of ProcessRequest() that is wrapped.
 
virtual int ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
 A special version of ProcessRequest meant specifically for the pipeline modified time request.
 
virtual int ModifyRequest (vtkInformation *request, int when)
 This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded.
 
vtkInformationGetInputPortInformation (int port)
 Get the information object associated with an input port.
 
vtkInformationGetOutputPortInformation (int port)
 Get the information object associated with an output port.
 
int GetNumberOfInputPorts ()
 Get the number of input ports used by the algorithm.
 
int GetNumberOfOutputPorts ()
 Get the number of output ports provided by the algorithm.
 
void SetProgress (double)
 SetProgress is deprecated.
 
void UpdateProgress (double amount)
 Update the progress of the process object.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
 String based versions of SetInputArrayToProcess().
 
vtkInformationGetInputArrayInformation (int idx)
 Get the info object for the specified input array to this algorithm.
 
void RemoveAllInputs ()
 Remove all the input data.
 
vtkDataObjectGetOutputDataObject (int port)
 Get the data object that will contain the algorithm output for the given port.
 
vtkDataObjectGetInputDataObject (int port, int connection)
 Get the data object that will contain the algorithm input for the given port and given connection.
 
virtual void RemoveInputConnection (int port, vtkAlgorithmOutput *input)
 Remove a connection from the given input port index.
 
virtual void RemoveInputConnection (int port, int idx)
 Remove a connection given by index idx.
 
virtual void RemoveAllInputConnections (int port)
 Removes all input connections.
 
virtual void SetInputDataObject (int port, vtkDataObject *data)
 Sets the data-object as an input on the given port index.
 
virtual void SetInputDataObject (vtkDataObject *data)
 
virtual void AddInputDataObject (int port, vtkDataObject *data)
 Add the data-object as an input to this given port.
 
virtual void AddInputDataObject (vtkDataObject *data)
 
vtkAlgorithmOutputGetOutputPort (int index)
 Get a proxy object corresponding to the given output port of this algorithm.
 
vtkAlgorithmOutputGetOutputPort ()
 
int GetNumberOfInputConnections (int port)
 Get the number of inputs currently connected to a port.
 
int GetTotalNumberOfInputConnections ()
 Get the total number of inputs for this algorithm.
 
vtkAlgorithmOutputGetInputConnection (int port, int index)
 Get the algorithm output port connected to an input port.
 
vtkAlgorithmGetInputAlgorithm (int port, int index, int &algPort)
 Returns the algorithm and the output port index of that algorithm connected to a port-index pair.
 
vtkAlgorithmGetInputAlgorithm (int port, int index)
 Returns the algorithm connected to a port-index pair.
 
vtkAlgorithmGetInputAlgorithm ()
 Equivalent to GetInputAlgorithm(0, 0).
 
vtkExecutiveGetInputExecutive (int port, int index)
 Returns the executive associated with a particular input connection.
 
vtkExecutiveGetInputExecutive ()
 Equivalent to GetInputExecutive(0, 0)
 
vtkInformationGetInputInformation (int port, int index)
 Return the information object that is associated with a particular input connection.
 
vtkInformationGetInputInformation ()
 Equivalent to GetInputInformation(0, 0)
 
vtkInformationGetOutputInformation (int port)
 Return the information object that is associated with a particular output port.
 
virtual vtkTypeBool Update (int port, vtkInformationVector *requests)
 This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date).
 
virtual vtkTypeBool Update (vtkInformation *requests)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual int UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual int UpdateExtent (const int extents[6])
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual int UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual void UpdateInformation ()
 Bring the algorithm's information up-to-date.
 
virtual void UpdateDataObject ()
 Create output object(s).
 
virtual void PropagateUpdateExtent ()
 Propagate meta-data upstream.
 
virtual void UpdateWholeExtent ()
 Bring this algorithm's outputs up-to-date.
 
void ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
 Convenience routine to convert from a linear ordering of input connections to a port/connection pair.
 
virtual vtkInformationGetInformation ()
 Set/Get the information object associated with this algorithm.
 
virtual void SetInformation (vtkInformation *)
 Set/Get the information object associated with this algorithm.
 
void Register (vtkObjectBase *o) override
 Participate in garbage collection.
 
void UnRegister (vtkObjectBase *o) override
 Participate in garbage collection.
 
virtual void SetAbortExecute (vtkTypeBool)
 Set/Get the AbortExecute flag for the process object.
 
virtual vtkTypeBool GetAbortExecute ()
 Set/Get the AbortExecute flag for the process object.
 
virtual void AbortExecuteOn ()
 Set/Get the AbortExecute flag for the process object.
 
virtual void AbortExecuteOff ()
 Set/Get the AbortExecute flag for the process object.
 
virtual double GetProgress ()
 Get the execution progress of a process object.
 
void SetProgressShiftScale (double shift, double scale)
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
virtual double GetProgressShift ()
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
virtual double GetProgressScale ()
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
void SetProgressText (const char *ptext)
 Set the current text message associated with the progress state.
 
virtual char * GetProgressText ()
 Set the current text message associated with the progress state.
 
virtual unsigned long GetErrorCode ()
 The error code contains a possible error that occurred while reading or writing the file.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputArrayToProcess (int idx, vtkInformation *info)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputConnection (int port, vtkAlgorithmOutput *input)
 Set the connection for the given input port index.
 
virtual void SetInputConnection (vtkAlgorithmOutput *input)
 Set the connection for the given input port index.
 
virtual void AddInputConnection (int port, vtkAlgorithmOutput *input)
 Add a connection to the given input port index.
 
virtual void AddInputConnection (vtkAlgorithmOutput *input)
 Add a connection to the given input port index.
 
virtual void Update (int port)
 Bring this algorithm's outputs up-to-date.
 
virtual void Update ()
 Bring this algorithm's outputs up-to-date.
 
virtual void SetReleaseDataFlag (int)
 Turn release data flag on or off for all output ports.
 
virtual int GetReleaseDataFlag ()
 Turn release data flag on or off for all output ports.
 
void ReleaseDataFlagOn ()
 Turn release data flag on or off for all output ports.
 
void ReleaseDataFlagOff ()
 Turn release data flag on or off for all output ports.
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
 This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
 This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
 
int * GetUpdateExtent ()
 These functions return the update extent for output ports that use 3D extents.
 
int * GetUpdateExtent (int port)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int extent[6])
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int port, int extent[6])
 These functions return the update extent for output ports that use 3D extents.
 
int GetUpdatePiece ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdatePiece (int port)
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateNumberOfPieces ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateNumberOfPieces (int port)
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateGhostLevel ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateGhostLevel (int port)
 These functions return the update extent for output ports that use piece extents.
 
void SetProgressObserver (vtkProgressObserver *)
 If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
 
virtual vtkProgressObserverGetProgressObserver ()
 If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
 
- Public Member Functions inherited from vtkObject
 vtkBaseTypeMacro (vtkObject, vtkObjectBase)
 
virtual void DebugOn ()
 Turn debugging output on.
 
virtual void DebugOff ()
 Turn debugging output off.
 
bool GetDebug ()
 Get the value of the debug flag.
 
void SetDebug (bool debugFlag)
 Set the value of the debug flag.
 
virtual void Modified ()
 Update the modification time for this object.
 
virtual vtkMTimeType GetMTime ()
 Return this object's modified time.
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
void RemoveObserver (unsigned long tag)
 
void RemoveObservers (unsigned long event)
 
void RemoveObservers (const char *event)
 
void RemoveAllObservers ()
 
vtkTypeBool HasObserver (unsigned long event)
 
vtkTypeBool HasObserver (const char *event)
 
int InvokeEvent (unsigned long event)
 
int InvokeEvent (const char *event)
 
unsigned long AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
unsigned long AddObserver (const char *event, vtkCommand *, float priority=0.0f)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkCommandGetCommand (unsigned long tag)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObserver (vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObservers (unsigned long event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObservers (const char *event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkTypeBool HasObserver (unsigned long event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkTypeBool HasObserver (const char *event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
 Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
 Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
 Allow user to set the AbortFlagOn() with the return value of the callback method.
 
int InvokeEvent (unsigned long event, void *callData)
 This method invokes an event and return whether the event was aborted or not.
 
int InvokeEvent (const char *event, void *callData)
 This method invokes an event and return whether the event was aborted or not.
 
- Public Member Functions inherited from vtkObjectBase
const char * GetClassName () const
 Return the class name as a string.
 
virtual vtkTypeBool IsA (const char *name)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
virtual vtkIdType GetNumberOfGenerationsFromBase (const char *name)
 Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
 
virtual void Delete ()
 Delete a VTK object.
 
virtual void FastDelete ()
 Delete a reference to this object.
 
void InitializeObjectBase ()
 
void Print (ostream &os)
 Print an object to an ostream.
 
virtual void Register (vtkObjectBase *o)
 Increase the reference count (mark as used by another object).
 
virtual void UnRegister (vtkObjectBase *o)
 Decrease the reference count (release by another object).
 
int GetReferenceCount ()
 Return the current reference count of this object.
 
void SetReferenceCount (int)
 Sets the reference count.
 
bool GetIsInMemkind () const
 A local state flag that remembers whether this object lives in the normal or extended memory space.
 
virtual void PrintHeader (ostream &os, vtkIndent indent)
 Methods invoked by print to print information about the object including superclasses.
 
virtual void PrintTrailer (ostream &os, vtkIndent indent)
 Methods invoked by print to print information about the object including superclasses.
 

Static Public Member Functions

static vtkMoleculeMapperNew ()
 
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkMoleculeMapperSafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkMapper
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkMapperSafeDownCast (vtkObjectBase *o)
 
static void SetResolveCoincidentTopology (int val)
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static int GetResolveCoincidentTopology ()
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static void SetResolveCoincidentTopologyToDefault ()
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static void SetResolveCoincidentTopologyToOff ()
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static void SetResolveCoincidentTopologyToPolygonOffset ()
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static void SetResolveCoincidentTopologyToShiftZBuffer ()
 Set/Get a global flag that controls whether coincident topology (e.g., a line on top of a polygon) is shifted to avoid z-buffer resolution (and hence rendering problems).
 
static void SetResolveCoincidentTopologyPolygonOffsetParameters (double factor, double units)
 Used to set the polygon offset scale factor and units.
 
static void GetResolveCoincidentTopologyPolygonOffsetParameters (double &factor, double &units)
 Used to set the polygon offset scale factor and units.
 
static void SetResolveCoincidentTopologyLineOffsetParameters (double factor, double units)
 Used to set the line offset scale factor and units.
 
static void GetResolveCoincidentTopologyLineOffsetParameters (double &factor, double &units)
 Used to set the line offset scale factor and units.
 
static void SetResolveCoincidentTopologyPointOffsetParameter (double units)
 Used to set the point offset value Used when ResolveCoincidentTopology is set to PolygonOffset.
 
static void GetResolveCoincidentTopologyPointOffsetParameter (double &units)
 Used to set the point offset value Used when ResolveCoincidentTopology is set to PolygonOffset.
 
static void SetResolveCoincidentTopologyPolygonOffsetFaces (int faces)
 Used when ResolveCoincidentTopology is set to PolygonOffset.
 
static int GetResolveCoincidentTopologyPolygonOffsetFaces ()
 Used when ResolveCoincidentTopology is set to PolygonOffset.
 
static void SetResolveCoincidentTopologyZShift (double val)
 Used to set the z-shift if ResolveCoincidentTopology is set to ShiftZBuffer.
 
static double GetResolveCoincidentTopologyZShift ()
 Used to set the z-shift if ResolveCoincidentTopology is set to ShiftZBuffer.
 
- Static Public Member Functions inherited from vtkAbstractMapper3D
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkAbstractMapper3DSafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkAbstractMapper
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkAbstractMapperSafeDownCast (vtkObjectBase *o)
 
static vtkDataArrayGetScalars (vtkDataSet *input, int scalarMode, int arrayAccessMode, int arrayId, const char *arrayName, int &cellFlag)
 Internal helper function for getting the active scalars.
 
static vtkAbstractArrayGetAbstractScalars (vtkDataSet *input, int scalarMode, int arrayAccessMode, int arrayId, const char *arrayName, int &cellFlag)
 Internal helper function for getting the active scalars as an abstract array.
 
- Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithmNew ()
 
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkAlgorithmSafeDownCast (vtkObjectBase *o)
 
static vtkInformationIntegerKeyINPUT_IS_OPTIONAL ()
 Keys used to specify input port requirements.
 
static vtkInformationIntegerKeyINPUT_IS_REPEATABLE ()
 
static vtkInformationInformationVectorKeyINPUT_REQUIRED_FIELDS ()
 
static vtkInformationStringVectorKeyINPUT_REQUIRED_DATA_TYPE ()
 
static vtkInformationInformationVectorKeyINPUT_ARRAYS_TO_PROCESS ()
 
static vtkInformationIntegerKeyINPUT_PORT ()
 
static vtkInformationIntegerKeyINPUT_CONNECTION ()
 
static vtkInformationIntegerKeyCAN_PRODUCE_SUB_EXTENT ()
 This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent.
 
static vtkInformationIntegerKeyCAN_HANDLE_PIECE_REQUEST ()
 Key that tells the pipeline that a particular algorithm can or cannot handle piece request.
 
static void SetDefaultExecutivePrototype (vtkExecutive *proto)
 If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance().
 
- Static Public Member Functions inherited from vtkObject
static vtkObjectNew ()
 Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
 
static void BreakOnError ()
 This method is called when vtkErrorMacro executes.
 
static void SetGlobalWarningDisplay (int val)
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static void GlobalWarningDisplayOn ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static void GlobalWarningDisplayOff ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static int GetGlobalWarningDisplay ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
- Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool IsTypeOf (const char *name)
 Return 1 if this class type is the same type of (or a subclass of) the named class.
 
static vtkIdType GetNumberOfGenerationsFromBaseType (const char *name)
 Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
 
static vtkObjectBaseNew ()
 Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
 
static void SetMemkindDirectory (const char *directoryname)
 The name of a directory, ideally mounted -o dax, to memory map an extended memory space within.
 
static bool GetUsingMemkind ()
 A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space.
 

Protected Member Functions

virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkMoleculeMapper ()
 
 ~vtkMoleculeMapper () override
 
void GlyphRender (vtkRenderer *ren, vtkActor *act)
 Internal render methods.
 
virtual void UpdateLatticePolyData ()
 
- Protected Member Functions inherited from vtkMapper
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkMapper ()
 
 ~vtkMapper () override
 
void MapScalarsToTexture (vtkAbstractArray *scalars, double alpha)
 
- Protected Member Functions inherited from vtkAbstractMapper3D
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkAbstractMapper3D ()
 
 ~vtkAbstractMapper3D () override=default
 
- Protected Member Functions inherited from vtkAbstractMapper
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkAbstractMapper ()
 
 ~vtkAbstractMapper () override
 
- Protected Member Functions inherited from vtkAlgorithm
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkAlgorithm ()
 
 ~vtkAlgorithm () override
 
virtual int FillInputPortInformation (int port, vtkInformation *info)
 Fill the input port information objects for this algorithm.
 
virtual int FillOutputPortInformation (int port, vtkInformation *info)
 Fill the output port information objects for this algorithm.
 
virtual void SetNumberOfInputPorts (int n)
 Set the number of input ports used by the algorithm.
 
virtual void SetNumberOfOutputPorts (int n)
 Set the number of output ports provided by the algorithm.
 
int InputPortIndexInRange (int index, const char *action)
 
int OutputPortIndexInRange (int index, const char *action)
 
int GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
 Get the assocition of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkInformationGetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
 This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector.
 
virtual vtkExecutiveCreateDefaultExecutive ()
 Create a default executive.
 
void ReportReferences (vtkGarbageCollector *) override
 
virtual void SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
 Replace the Nth connection on the given input port.
 
virtual void SetNumberOfInputConnections (int port, int n)
 Set the number of input connections on the given input port.
 
void SetInputDataInternal (int port, vtkDataObject *input)
 These methods are used by subclasses to implement methods to set data objects directly as input.
 
void AddInputDataInternal (int port, vtkDataObject *input)
 
int GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
int GetInputArrayAssociation (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
 Filters that have multiple connections on one port can use this signature.
 
virtual void SetErrorCode (unsigned long)
 The error code contains a possible error that occurred while reading or writing the file.
 
- Protected Member Functions inherited from vtkObject
 vtkObject ()
 
 ~vtkObject () override
 
void RegisterInternal (vtkObjectBase *, vtkTypeBool check) override
 
void UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override
 
void InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr)
 These methods allow a command to exclusively grab all events.
 
void InternalReleaseFocus ()
 These methods allow a command to exclusively grab all events.
 
- Protected Member Functions inherited from vtkObjectBase
 vtkObjectBase ()
 
virtual ~vtkObjectBase ()
 
virtual void RegisterInternal (vtkObjectBase *, vtkTypeBool check)
 
virtual void UnRegisterInternal (vtkObjectBase *, vtkTypeBool check)
 
virtual void ReportReferences (vtkGarbageCollector *)
 
 vtkObjectBase (const vtkObjectBase &)
 
void operator= (const vtkObjectBase &)
 

Protected Attributes

bool RenderLattice
 
unsigned char LatticeColor [3]
 
vtkNew< vtkPolyDataLatticePolyData
 
vtkNew< vtkPolyDataMapperLatticeMapper
 
vtkNew< vtkPeriodicTablePeriodicTable
 Periodic table for lookups.
 
bool RenderAtoms
 Customize atom rendering.
 
int AtomicRadiusType
 Customize atom rendering.
 
float AtomicRadiusScaleFactor
 Customize atom rendering.
 
char * AtomicRadiusArrayName
 Customize atom rendering.
 
int AtomColorMode
 Customize atom rendering.
 
unsigned char AtomColor [3]
 Customize atom rendering.
 
bool RenderBonds
 Customize bond rendering.
 
int BondColorMode
 Customize bond rendering.
 
bool UseMultiCylindersForBonds
 Customize bond rendering.
 
float BondRadius
 Customize bond rendering.
 
unsigned char BondColor [3]
 Customize bond rendering.
 
vtkNew< vtkGlyph3DMapperAtomGlyphMapper
 Internal mappers.
 
vtkNew< vtkGlyph3DMapperBondGlyphMapper
 Internal mappers.
 
- Protected Attributes inherited from vtkMapper
vtkUnsignedCharArrayColors
 
vtkTypeBool InterpolateScalarsBeforeMapping
 
vtkFloatArrayColorCoordinates
 
vtkImageDataColorTextureMap
 
vtkScalarsToColorsLookupTable
 
vtkTypeBool ScalarVisibility
 
vtkTimeStamp BuildTime
 
double ScalarRange [2]
 
vtkTypeBool UseLookupTableScalarRange
 
int ColorMode
 
int ScalarMode
 
double RenderTime
 
int ArrayId
 
char * ArrayName
 
int ArrayComponent
 
int ArrayAccessMode
 
vtkIdType FieldDataTupleId
 
vtkTypeBool Static
 
double CoincidentPolygonFactor
 
double CoincidentPolygonOffset
 
double CoincidentLineFactor
 
double CoincidentLineOffset
 
double CoincidentPointOffset
 
vtkSelectionSelection = nullptr
 
- Protected Attributes inherited from vtkAbstractMapper3D
double Bounds [6]
 
double Center [3]
 
- Protected Attributes inherited from vtkAbstractMapper
vtkTimerLogTimer
 
double TimeToDraw
 
vtkWindowLastWindow
 
vtkPlaneCollectionClippingPlanes
 
- Protected Attributes inherited from vtkAlgorithm
vtkInformationInformation
 
double Progress
 
char * ProgressText
 
vtkProgressObserverProgressObserver
 
unsigned long ErrorCode
 The error code contains a possible error that occurred while reading or writing the file.
 
- Protected Attributes inherited from vtkObject
bool Debug
 
vtkTimeStamp MTime
 
vtkSubjectHelper * SubjectHelper
 
- Protected Attributes inherited from vtkObjectBase
std::atomic< int32_t > ReferenceCount
 
vtkWeakPointerBase ** WeakPointers
 
vtkNew< vtkPolyDataAtomGlyphPolyData
 Cached variables and update methods.
 
vtkNew< vtkTrivialProducerAtomGlyphPointOutput
 Cached variables and update methods.
 
vtkNew< vtkPolyDataBondGlyphPolyData
 Cached variables and update methods.
 
vtkNew< vtkTrivialProducerBondGlyphPointOutput
 Cached variables and update methods.
 
bool GlyphDataInitialized
 Cached variables and update methods.
 
virtual void UpdateGlyphPolyData ()
 Cached variables and update methods.
 
virtual void UpdateAtomGlyphPolyData ()
 Cached variables and update methods.
 
virtual void UpdateBondGlyphPolyData ()
 Cached variables and update methods.
 

Additional Inherited Members

- Public Attributes inherited from vtkAlgorithm
vtkTypeBool AbortExecute
 
- Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKeyPORT_REQUIREMENTS_FILLED ()
 
- Static Protected Member Functions inherited from vtkObjectBase
static vtkMallocingFunction GetCurrentMallocFunction ()
 
static vtkReallocingFunction GetCurrentReallocFunction ()
 
static vtkFreeingFunction GetCurrentFreeFunction ()
 
static vtkFreeingFunction GetAlternateFreeFunction ()
 
- Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutiveDefaultExecutivePrototype
 

Detailed Description

Mapper that draws vtkMolecule objects.

vtkMoleculeMapper uses glyphs (display lists) to quickly render a molecule.

Online Examples:

Definition at line 62 of file vtkMoleculeMapper.h.

Member Typedef Documentation

◆ Superclass

Definition at line 66 of file vtkMoleculeMapper.h.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum
Enumerator
CovalentRadius 
VDWRadius 
UnitRadius 
CustomArrayRadius 

Definition at line 160 of file vtkMoleculeMapper.h.

◆ anonymous enum

anonymous enum
Enumerator
SingleColor 
DiscreteByAtom 

Definition at line 203 of file vtkMoleculeMapper.h.

Constructor & Destructor Documentation

◆ vtkMoleculeMapper()

vtkMoleculeMapper::vtkMoleculeMapper ( )
protected

◆ ~vtkMoleculeMapper()

vtkMoleculeMapper::~vtkMoleculeMapper ( )
overrideprotected

Member Function Documentation

◆ New()

static vtkMoleculeMapper * vtkMoleculeMapper::New ( )
static

◆ IsTypeOf()

static vtkTypeBool vtkMoleculeMapper::IsTypeOf ( const char *  type)
static

◆ IsA()

virtual vtkTypeBool vtkMoleculeMapper::IsA ( const char *  name)
virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ SafeDownCast()

static vtkMoleculeMapper * vtkMoleculeMapper::SafeDownCast ( vtkObjectBase o)
static

◆ NewInstanceInternal()

virtual vtkObjectBase * vtkMoleculeMapper::NewInstanceInternal ( ) const
protectedvirtual

Reimplemented from vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ NewInstance()

vtkMoleculeMapper * vtkMoleculeMapper::NewInstance ( ) const

◆ PrintSelf()

void vtkMoleculeMapper::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkAlgorithm.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ SetInputData()

void vtkMoleculeMapper::SetInputData ( vtkMolecule in)

Get/Set the input vtkMolecule.

◆ GetInput()

vtkMolecule * vtkMoleculeMapper::GetInput ( )

Get/Set the input vtkMolecule.

◆ UseBallAndStickSettings()

void vtkMoleculeMapper::UseBallAndStickSettings ( )

Set ivars to default ball-and-stick settings.

This is equivalent to the following:

  • SetRenderAtoms( true )
  • SetRenderBonds( true )
  • SetAtomicRadiusType( VDWRadius )
  • SetAtomicRadiusScaleFactor( 0.3 )
  • SetBondColorMode( DiscreteByAtom )
  • SetUseMultiCylindersForBonds( true )
  • SetBondRadius( 0.075 )

◆ UseVDWSpheresSettings()

void vtkMoleculeMapper::UseVDWSpheresSettings ( )

Set ivars to default van der Waals spheres settings.

This is equivalent to the following:

  • SetRenderAtoms( true )
  • SetRenderBonds( true )
  • SetAtomicRadiusType( VDWRadius )
  • SetAtomicRadiusScaleFactor( 1.0 )
  • SetBondColorMode( DiscreteByAtom )
  • SetUseMultiCylindersForBonds( true )
  • SetBondRadius( 0.075 )

◆ UseLiquoriceStickSettings()

void vtkMoleculeMapper::UseLiquoriceStickSettings ( )

Set ivars to default liquorice stick settings.

This is equivalent to the following:

  • SetRenderAtoms( true )
  • SetRenderBonds( true )
  • SetAtomicRadiusType( UnitRadius )
  • SetAtomicRadiusScaleFactor( 0.1 )
  • SetBondColorMode( DiscreteByAtom )
  • SetUseMultiCylindersForBonds( false )
  • SetBondRadius( 0.1 )

◆ UseFastSettings()

void vtkMoleculeMapper::UseFastSettings ( )

Set ivars to use fast settings that may be useful for rendering extremely large molecules where the overall shape is more important than the details of the atoms/bond.

This is equivalent to the following:

  • SetRenderAtoms( true )
  • SetRenderBonds( true )
  • SetAtomicRadiusType( UnitRadius )
  • SetAtomicRadiusScaleFactor( 0.60 )
  • SetBondColorMode( SingleColor )
  • SetBondColor( 50, 50, 50 )
  • SetUseMultiCylindersForBonds( false )
  • SetBondRadius( 0.075 )

◆ GetRenderAtoms()

virtual bool vtkMoleculeMapper::GetRenderAtoms ( )
virtual

Get/Set whether or not to render atoms.

Default: On.

◆ SetRenderAtoms()

virtual void vtkMoleculeMapper::SetRenderAtoms ( bool  )
virtual

Get/Set whether or not to render atoms.

Default: On.

◆ RenderAtomsOn()

virtual void vtkMoleculeMapper::RenderAtomsOn ( )
virtual

Get/Set whether or not to render atoms.

Default: On.

◆ RenderAtomsOff()

virtual void vtkMoleculeMapper::RenderAtomsOff ( )
virtual

Get/Set whether or not to render atoms.

Default: On.

◆ GetRenderBonds()

virtual bool vtkMoleculeMapper::GetRenderBonds ( )
virtual

Get/Set whether or not to render bonds.

Default: On.

◆ SetRenderBonds()

virtual void vtkMoleculeMapper::SetRenderBonds ( bool  )
virtual

Get/Set whether or not to render bonds.

Default: On.

◆ RenderBondsOn()

virtual void vtkMoleculeMapper::RenderBondsOn ( )
virtual

Get/Set whether or not to render bonds.

Default: On.

◆ RenderBondsOff()

virtual void vtkMoleculeMapper::RenderBondsOff ( )
virtual

Get/Set whether or not to render bonds.

Default: On.

◆ GetRenderLattice()

virtual bool vtkMoleculeMapper::GetRenderLattice ( )
virtual

Get/Set whether or not to render the unit cell lattice, if present.

Default: On.

◆ SetRenderLattice()

virtual void vtkMoleculeMapper::SetRenderLattice ( bool  )
virtual

Get/Set whether or not to render the unit cell lattice, if present.

Default: On.

◆ RenderLatticeOn()

virtual void vtkMoleculeMapper::RenderLatticeOn ( )
virtual

Get/Set whether or not to render the unit cell lattice, if present.

Default: On.

◆ RenderLatticeOff()

virtual void vtkMoleculeMapper::RenderLatticeOff ( )
virtual

Get/Set whether or not to render the unit cell lattice, if present.

Default: On.

◆ GetAtomicRadiusType()

virtual int vtkMoleculeMapper::GetAtomicRadiusType ( )
virtual

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

◆ SetAtomicRadiusType()

virtual void vtkMoleculeMapper::SetAtomicRadiusType ( int  )
virtual

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

◆ GetAtomicRadiusTypeAsString()

const char * vtkMoleculeMapper::GetAtomicRadiusTypeAsString ( )

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

◆ SetAtomicRadiusTypeToCovalentRadius()

void vtkMoleculeMapper::SetAtomicRadiusTypeToCovalentRadius ( )
inline

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

Definition at line 177 of file vtkMoleculeMapper.h.

◆ SetAtomicRadiusTypeToVDWRadius()

void vtkMoleculeMapper::SetAtomicRadiusTypeToVDWRadius ( )
inline

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

Definition at line 178 of file vtkMoleculeMapper.h.

◆ SetAtomicRadiusTypeToUnitRadius()

void vtkMoleculeMapper::SetAtomicRadiusTypeToUnitRadius ( )
inline

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

Definition at line 179 of file vtkMoleculeMapper.h.

◆ SetAtomicRadiusTypeToCustomArrayRadius()

void vtkMoleculeMapper::SetAtomicRadiusTypeToCustomArrayRadius ( )
inline

Get/Set the type of radius used to generate the atoms.

Default: VDWRadius. If CustomArrayRadius is used, the VertexData array named 'radii' is used for per-atom radii.

Definition at line 180 of file vtkMoleculeMapper.h.

◆ GetAtomicRadiusScaleFactor()

virtual float vtkMoleculeMapper::GetAtomicRadiusScaleFactor ( )
virtual

Get/Set the uniform scaling factor applied to the atoms.

This is ignored when AtomicRadiusType == CustomArrayRadius. Default: 0.3.

◆ SetAtomicRadiusScaleFactor()

virtual void vtkMoleculeMapper::SetAtomicRadiusScaleFactor ( float  )
virtual

Get/Set the uniform scaling factor applied to the atoms.

This is ignored when AtomicRadiusType == CustomArrayRadius. Default: 0.3.

◆ GetUseMultiCylindersForBonds()

virtual bool vtkMoleculeMapper::GetUseMultiCylindersForBonds ( )
virtual

Get/Set whether multicylinders will be used to represent multiple bonds.

Default: On.

◆ SetUseMultiCylindersForBonds()

virtual void vtkMoleculeMapper::SetUseMultiCylindersForBonds ( bool  )
virtual

Get/Set whether multicylinders will be used to represent multiple bonds.

Default: On.

◆ UseMultiCylindersForBondsOn()

virtual void vtkMoleculeMapper::UseMultiCylindersForBondsOn ( )
virtual

Get/Set whether multicylinders will be used to represent multiple bonds.

Default: On.

◆ UseMultiCylindersForBondsOff()

virtual void vtkMoleculeMapper::UseMultiCylindersForBondsOff ( )
virtual

Get/Set whether multicylinders will be used to represent multiple bonds.

Default: On.

◆ GetBondColorMode()

virtual int vtkMoleculeMapper::GetBondColorMode ( )
virtual

Get/Set the method by which bonds are colored.

If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used.

If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

◆ SetBondColorMode()

virtual void vtkMoleculeMapper::SetBondColorMode ( int  )
virtual

Get/Set the method by which bonds are colored.

If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used.

If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

◆ SetBondColorModeToSingleColor()

void vtkMoleculeMapper::SetBondColorModeToSingleColor ( )
inline

Get/Set the method by which bonds are colored.

If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used.

If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

Definition at line 222 of file vtkMoleculeMapper.h.

◆ SetBondColorModeToDiscreteByAtom()

void vtkMoleculeMapper::SetBondColorModeToDiscreteByAtom ( )
inline

Get/Set the method by which bonds are colored.

If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used.

If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

Definition at line 223 of file vtkMoleculeMapper.h.

◆ GetBondColorModeAsString()

const char * vtkMoleculeMapper::GetBondColorModeAsString ( )

Get/Set the method by which bonds are colored.

If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used.

If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

◆ GetAtomColorMode()

virtual int vtkMoleculeMapper::GetAtomColorMode ( )
virtual

Get/Set the method by which atoms are colored.

If 'SingleColor' is used, all atoms will have the same color. Use SetAtomColor to set the rgb values to be used.

If 'DiscreteByAtom' is selected, each atom is colored using the internal lookup table.

◆ SetAtomColorMode()

virtual void vtkMoleculeMapper::SetAtomColorMode ( int  )
virtual

Get/Set the method by which atoms are colored.

If 'SingleColor' is used, all atoms will have the same color. Use SetAtomColor to set the rgb values to be used.

If 'DiscreteByAtom' is selected, each atom is colored using the internal lookup table.

◆ GetAtomColor() [1/3]

virtual unsigned char * vtkMoleculeMapper::GetAtomColor ( )
virtual

Get/Set the color of the atoms as an rgb tuple.

Default: {150, 150, 150} (grey)

◆ GetAtomColor() [2/3]

virtual void vtkMoleculeMapper::GetAtomColor ( unsigned char &  ,
unsigned char &  ,
unsigned char &   
)
virtual

Get/Set the color of the atoms as an rgb tuple.

Default: {150, 150, 150} (grey)

◆ GetAtomColor() [3/3]

virtual void vtkMoleculeMapper::GetAtomColor ( unsigned char  [3])
virtual

Get/Set the color of the atoms as an rgb tuple.

Default: {150, 150, 150} (grey)

◆ SetAtomColor() [1/2]

virtual void vtkMoleculeMapper::SetAtomColor ( unsigned char  ,
unsigned char  ,
unsigned char   
)
virtual

Get/Set the color of the atoms as an rgb tuple.

Default: {150, 150, 150} (grey)

◆ SetAtomColor() [2/2]

virtual void vtkMoleculeMapper::SetAtomColor ( unsigned char  [3])
virtual

Get/Set the color of the atoms as an rgb tuple.

Default: {150, 150, 150} (grey)

◆ GetBondColor() [1/3]

virtual unsigned char * vtkMoleculeMapper::GetBondColor ( )
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {50, 50, 50} (dark grey)

◆ GetBondColor() [2/3]

virtual void vtkMoleculeMapper::GetBondColor ( unsigned char &  ,
unsigned char &  ,
unsigned char &   
)
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {50, 50, 50} (dark grey)

◆ GetBondColor() [3/3]

virtual void vtkMoleculeMapper::GetBondColor ( unsigned char  [3])
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {50, 50, 50} (dark grey)

◆ SetBondColor() [1/2]

virtual void vtkMoleculeMapper::SetBondColor ( unsigned char  ,
unsigned char  ,
unsigned char   
)
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {50, 50, 50} (dark grey)

◆ SetBondColor() [2/2]

virtual void vtkMoleculeMapper::SetBondColor ( unsigned char  [3])
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {50, 50, 50} (dark grey)

◆ GetBondRadius()

virtual float vtkMoleculeMapper::GetBondRadius ( )
virtual

Get/Set the radius of the bond cylinders.

Default: 0.075

◆ SetBondRadius()

virtual void vtkMoleculeMapper::SetBondRadius ( float  )
virtual

Get/Set the radius of the bond cylinders.

Default: 0.075

◆ GetLatticeColor() [1/3]

virtual unsigned char * vtkMoleculeMapper::GetLatticeColor ( )
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {255, 255, 255} (white)

◆ GetLatticeColor() [2/3]

virtual void vtkMoleculeMapper::GetLatticeColor ( unsigned char &  ,
unsigned char &  ,
unsigned char &   
)
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {255, 255, 255} (white)

◆ GetLatticeColor() [3/3]

virtual void vtkMoleculeMapper::GetLatticeColor ( unsigned char  [3])
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {255, 255, 255} (white)

◆ SetLatticeColor() [1/2]

virtual void vtkMoleculeMapper::SetLatticeColor ( unsigned char  ,
unsigned char  ,
unsigned char   
)
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {255, 255, 255} (white)

◆ SetLatticeColor() [2/2]

virtual void vtkMoleculeMapper::SetLatticeColor ( unsigned char  [3])
virtual

Get/Set the color of the bonds as an rgb tuple.

Default: {255, 255, 255} (white)

◆ GetSelectedAtomsAndBonds()

virtual void vtkMoleculeMapper::GetSelectedAtomsAndBonds ( vtkSelection selection,
vtkIdTypeArray atomIds,
vtkIdTypeArray bondIds 
)
virtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.

The vtkIdTypeArray

◆ GetSelectedAtoms()

virtual void vtkMoleculeMapper::GetSelectedAtoms ( vtkSelection selection,
vtkIdTypeArray atomIds 
)
inlinevirtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.

The vtkIdTypeArray

Definition at line 283 of file vtkMoleculeMapper.h.

◆ GetSelectedBonds()

virtual void vtkMoleculeMapper::GetSelectedBonds ( vtkSelection selection,
vtkIdTypeArray bondIds 
)
inlinevirtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.

The vtkIdTypeArray

Definition at line 287 of file vtkMoleculeMapper.h.

◆ Render()

void vtkMoleculeMapper::Render ( vtkRenderer ,
vtkActor  
)
overridevirtual

Reimplemented from base class.

Implements vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ ReleaseGraphicsResources()

void vtkMoleculeMapper::ReleaseGraphicsResources ( vtkWindow )
overridevirtual

Reimplemented from base class.

Reimplemented from vtkAbstractMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ GetBounds() [1/2]

double * vtkMoleculeMapper::GetBounds ( )
overridevirtual

Reimplemented from base class.

Implements vtkAbstractMapper3D.

◆ GetBounds() [2/2]

void vtkMoleculeMapper::GetBounds ( double  bounds[6])
inlineoverridevirtual

Reimplemented from base class.

Reimplemented from vtkAbstractMapper3D.

Definition at line 300 of file vtkMoleculeMapper.h.

◆ FillInputPortInformation()

int vtkMoleculeMapper::FillInputPortInformation ( int  port,
vtkInformation info 
)
overridevirtual

Reimplemented from base class.

Reimplemented from vtkAlgorithm.

◆ GetSupportsSelection()

bool vtkMoleculeMapper::GetSupportsSelection ( )
inlineoverridevirtual

Reimplemented from base class.

Reimplemented from vtkMapper.

Definition at line 302 of file vtkMoleculeMapper.h.

◆ GetAtomicRadiusArrayName()

virtual char * vtkMoleculeMapper::GetAtomicRadiusArrayName ( )
virtual

Get/Set the atomic radius array name.

Default: "radii" It is only used when AtomicRadiusType is set to CustomArrayRadius.

◆ SetAtomicRadiusArrayName()

virtual void vtkMoleculeMapper::SetAtomicRadiusArrayName ( const char *  )
virtual

Get/Set the atomic radius array name.

Default: "radii" It is only used when AtomicRadiusType is set to CustomArrayRadius.

◆ SetMapScalars()

virtual void vtkMoleculeMapper::SetMapScalars ( bool  map)
virtual

Helper method to set ScalarMode on both AtomGlyphMapper and BondGlyphMapper.

true means VTK_COLOR_MODE_MAP_SCALARS, false VTK_COLOR_MODE_DIRECT_SCALARS.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ GetPeriodicTable()

vtkPeriodicTable * vtkMoleculeMapper::GetPeriodicTable ( )
inline

Accessor to internal structure.

This is exposed to make it available for ray tracers.

Definition at line 323 of file vtkMoleculeMapper.h.

◆ GlyphRender()

void vtkMoleculeMapper::GlyphRender ( vtkRenderer ren,
vtkActor act 
)
protected

Internal render methods.

◆ UpdateGlyphPolyData()

virtual void vtkMoleculeMapper::UpdateGlyphPolyData ( )
protectedvirtual

Cached variables and update methods.

◆ UpdateAtomGlyphPolyData()

virtual void vtkMoleculeMapper::UpdateAtomGlyphPolyData ( )
protectedvirtual

Cached variables and update methods.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ UpdateBondGlyphPolyData()

virtual void vtkMoleculeMapper::UpdateBondGlyphPolyData ( )
protectedvirtual

Cached variables and update methods.

Reimplemented in vtkOpenGLMoleculeMapper.

◆ UpdateLatticePolyData()

virtual void vtkMoleculeMapper::UpdateLatticePolyData ( )
protectedvirtual

Member Data Documentation

◆ RenderAtoms

bool vtkMoleculeMapper::RenderAtoms
protected

Customize atom rendering.

Definition at line 333 of file vtkMoleculeMapper.h.

◆ AtomicRadiusType

int vtkMoleculeMapper::AtomicRadiusType
protected

Customize atom rendering.

Definition at line 334 of file vtkMoleculeMapper.h.

◆ AtomicRadiusScaleFactor

float vtkMoleculeMapper::AtomicRadiusScaleFactor
protected

Customize atom rendering.

Definition at line 335 of file vtkMoleculeMapper.h.

◆ AtomicRadiusArrayName

char* vtkMoleculeMapper::AtomicRadiusArrayName
protected

Customize atom rendering.

Definition at line 336 of file vtkMoleculeMapper.h.

◆ AtomColorMode

int vtkMoleculeMapper::AtomColorMode
protected

Customize atom rendering.

Definition at line 337 of file vtkMoleculeMapper.h.

◆ AtomColor

unsigned char vtkMoleculeMapper::AtomColor[3]
protected

Customize atom rendering.

Definition at line 338 of file vtkMoleculeMapper.h.

◆ RenderBonds

bool vtkMoleculeMapper::RenderBonds
protected

Customize bond rendering.

Definition at line 345 of file vtkMoleculeMapper.h.

◆ BondColorMode

int vtkMoleculeMapper::BondColorMode
protected

Customize bond rendering.

Definition at line 346 of file vtkMoleculeMapper.h.

◆ UseMultiCylindersForBonds

bool vtkMoleculeMapper::UseMultiCylindersForBonds
protected

Customize bond rendering.

Definition at line 347 of file vtkMoleculeMapper.h.

◆ BondRadius

float vtkMoleculeMapper::BondRadius
protected

Customize bond rendering.

Definition at line 348 of file vtkMoleculeMapper.h.

◆ BondColor

unsigned char vtkMoleculeMapper::BondColor[3]
protected

Customize bond rendering.

Definition at line 349 of file vtkMoleculeMapper.h.

◆ RenderLattice

bool vtkMoleculeMapper::RenderLattice
protected

Definition at line 352 of file vtkMoleculeMapper.h.

◆ AtomGlyphPolyData

vtkNew<vtkPolyData> vtkMoleculeMapper::AtomGlyphPolyData
protected

Cached variables and update methods.

Definition at line 363 of file vtkMoleculeMapper.h.

◆ AtomGlyphPointOutput

vtkNew<vtkTrivialProducer> vtkMoleculeMapper::AtomGlyphPointOutput
protected

Cached variables and update methods.

Definition at line 364 of file vtkMoleculeMapper.h.

◆ BondGlyphPolyData

vtkNew<vtkPolyData> vtkMoleculeMapper::BondGlyphPolyData
protected

Cached variables and update methods.

Definition at line 365 of file vtkMoleculeMapper.h.

◆ BondGlyphPointOutput

vtkNew<vtkTrivialProducer> vtkMoleculeMapper::BondGlyphPointOutput
protected

Cached variables and update methods.

Definition at line 366 of file vtkMoleculeMapper.h.

◆ GlyphDataInitialized

bool vtkMoleculeMapper::GlyphDataInitialized
protected

Cached variables and update methods.

Definition at line 367 of file vtkMoleculeMapper.h.

◆ AtomGlyphMapper

vtkNew<vtkGlyph3DMapper> vtkMoleculeMapper::AtomGlyphMapper
protected

Internal mappers.

Definition at line 377 of file vtkMoleculeMapper.h.

◆ BondGlyphMapper

vtkNew<vtkGlyph3DMapper> vtkMoleculeMapper::BondGlyphMapper
protected

Internal mappers.

Definition at line 378 of file vtkMoleculeMapper.h.

◆ LatticeColor

unsigned char vtkMoleculeMapper::LatticeColor[3]
protected

Definition at line 381 of file vtkMoleculeMapper.h.

◆ LatticePolyData

vtkNew<vtkPolyData> vtkMoleculeMapper::LatticePolyData
protected

Definition at line 382 of file vtkMoleculeMapper.h.

◆ LatticeMapper

vtkNew<vtkPolyDataMapper> vtkMoleculeMapper::LatticeMapper
protected

Definition at line 383 of file vtkMoleculeMapper.h.

◆ PeriodicTable

vtkNew<vtkPeriodicTable> vtkMoleculeMapper::PeriodicTable
protected

Periodic table for lookups.

Definition at line 389 of file vtkMoleculeMapper.h.


The documentation for this class was generated from the following file: