A writer for MINC files. More...

#include <vtkMINCImageWriter.h>

Inheritance diagram for vtkMINCImageWriter:

Collaboration diagram for vtkMINCImageWriter:

Public Types
typedef vtkImageWriter	Superclass

Public Types inherited from vtkImageWriter
typedef vtkImageAlgorithm	Superclass

Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
	Values used for setting the desired output precision for various algorithms. More...

typedef vtkObject	Superclass

Public Member Functions
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

vtkMINCImageWriter *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses. More...

virtual const char *	GetFileExtensions ()
	Get the entension for this file format. More...

virtual const char *	GetDescriptiveName ()
	Get the name of this file format. More...

void	SetFileName (const char *name) override
	Set the file name. More...

void	Write () override
	Write the data. More...


virtual void	SetDirectionCosines (vtkMatrix4x4 *matrix)
	Set a matrix that describes the orientation of the data. More...

virtual vtkMatrix4x4 *	GetDirectionCosines ()
	Set a matrix that describes the orientation of the data. More...


virtual void	SetRescaleSlope (double)
	Set the slope and intercept for rescaling the intensities. More...

virtual double	GetRescaleSlope ()
	Set the slope and intercept for rescaling the intensities. More...

virtual void	SetRescaleIntercept (double)
	Set the slope and intercept for rescaling the intensities. More...

virtual double	GetRescaleIntercept ()
	Set the slope and intercept for rescaling the intensities. More...


virtual void	SetImageAttributes (vtkMINCImageAttributes *attributes)
	Set the image attributes, which contain patient information and other useful metadata. More...

virtual vtkMINCImageAttributes *	GetImageAttributes ()
	Set the image attributes, which contain patient information and other useful metadata. More...


virtual void	SetStrictValidation (vtkTypeBool)
	Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard. More...

virtual void	StrictValidationOn ()
	Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard. More...

virtual void	StrictValidationOff ()
	Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard. More...

virtual vtkTypeBool	GetStrictValidation ()
	Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard. More...


virtual void	SetHistoryAddition (const char *)
	Set a string value to append to the history of the file. More...

virtual char *	GetHistoryAddition ()
	Set a string value to append to the history of the file. More...

Public Member Functions inherited from vtkImageWriter
vtkImageWriter *	NewInstance () const

vtkImageData *	GetInput ()
	Set/Get the input object from the image pipeline. More...

void	DeleteFiles ()

virtual char *	GetFileName ()
	Specify file name for the image file. More...

virtual void	SetFilePrefix (const char *)
	Specify file prefix for the image file(s).You should specify either a FileName or FilePrefix. More...

virtual char *	GetFilePrefix ()
	Specify file prefix for the image file(s).You should specify either a FileName or FilePrefix. More...

virtual void	SetFilePattern (const char *)
	The snprintf format used to build filename from FilePrefix and number. More...

virtual char *	GetFilePattern ()
	The snprintf format used to build filename from FilePrefix and number. More...

virtual void	SetFileDimensionality (int)
	What dimension are the files to be written. More...

virtual int	GetFileDimensionality ()
	What dimension are the files to be written. More...

Public Member Functions inherited from vtkImageAlgorithm
vtkImageAlgorithm *	NewInstance () const

int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector ) override
	Process a request from the executive. More...

vtkImageData *	GetOutput ()
	Get the output data object for a port on this algorithm. More...

vtkImageData *	GetOutput (int)
	Get the output data object for a port on this algorithm. More...

virtual void	SetOutput (vtkDataObject *d)
	Get the output data object for a port on this algorithm. More...

void	SetInputData (vtkDataObject *)
	Assign a data object as input. More...

void	SetInputData (int, vtkDataObject *)
	Assign a data object as input. More...

vtkDataObject *	GetInput (int port)
	Get a data object for one of the input port connections. More...

vtkDataObject *	GetInput ()
	Get a data object for one of the input port connections. More...

vtkImageData *	GetImageDataInput (int port)
	Get a data object for one of the input port connections. More...

virtual void	AddInputData (vtkDataObject *)
	Assign a data object as input. More...

virtual void	AddInputData (int, vtkDataObject *)
	Assign a data object as input. More...

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()
	Check whether this algorithm has an assigned executive. More...

vtkExecutive *	GetExecutive ()
	Get this algorithm's executive. More...

virtual void	SetExecutive (vtkExecutive *executive)
	Set this algorithm's executive. More...

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)
	Version of ProcessRequest() that is wrapped. More...

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
	A special version of ProcessRequest meant specifically for the pipeline modified time request. More...

virtual int	ModifyRequest (vtkInformation *request, int when)
	This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded. More...

vtkInformation *	GetInputPortInformation (int port)
	Get the information object associated with an input port. More...

vtkInformation *	GetOutputPortInformation (int port)
	Get the information object associated with an output port. More...

int	GetNumberOfInputPorts ()
	Get the number of input ports used by the algorithm. More...

int	GetNumberOfOutputPorts ()
	Get the number of output ports provided by the algorithm. More...

void	UpdateProgress (double amount)
	Update the progress of the process object. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)
	String based versions of SetInputArrayToProcess(). More...

vtkInformation *	GetInputArrayInformation (int idx)
	Get the info object for the specified input array to this algorithm. More...

void	RemoveAllInputs ()
	Remove all the input data. More...

vtkDataObject *	GetOutputDataObject (int port)
	Get the data object that will contain the algorithm output for the given port. More...

vtkDataObject *	GetInputDataObject (int port, int connection)
	Get the data object that will contain the algorithm input for the given port and given connection. More...

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
	Remove a connection from the given input port index. More...

virtual void	RemoveInputConnection (int port, int idx)
	Remove a connection given by index idx. More...

virtual void	RemoveAllInputConnections (int port)
	Removes all input connections. More...

virtual void	SetInputDataObject (int port, vtkDataObject *data)
	Sets the data-object as an input on the given port index. More...

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)
	Add the data-object as an input to this given port. More...

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)
	Get a proxy object corresponding to the given output port of this algorithm. More...

vtkAlgorithmOutput *	GetOutputPort ()

int	GetNumberOfInputConnections (int port)
	Get the number of inputs currently connected to a port. More...

int	GetTotalNumberOfInputConnections ()
	Get the total number of inputs for this algorithm. More...

vtkAlgorithmOutput *	GetInputConnection (int port, int index)
	Get the algorithm output port connected to an input port. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
	Returns the algorithm and the output port index of that algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index)
	Returns the algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm ()
	Equivalent to GetInputAlgorithm(0, 0). More...

vtkExecutive *	GetInputExecutive (int port, int index)
	Returns the executive associated with a particular input connection. More...

vtkExecutive *	GetInputExecutive ()
	Equivalent to GetInputExecutive(0, 0) More...

vtkInformation *	GetInputInformation (int port, int index)
	Return the information object that is associated with a particular input connection. More...

vtkInformation *	GetInputInformation ()
	Equivalent to GetInputInformation(0, 0) More...

vtkInformation *	GetOutputInformation (int port)
	Return the information object that is associated with a particular output port. More...

virtual int	Update (int port, vtkInformationVector *requests)
	This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date). More...

virtual int	Update (vtkInformation *requests)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateExtent (const int extents[6])
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual void	UpdateInformation ()
	Bring the algorithm's information up-to-date. More...

virtual void	UpdateDataObject ()
	Create output object(s). More...

virtual void	PropagateUpdateExtent ()
	Propagate meta-data upstream. More...

virtual void	UpdateWholeExtent ()
	Bring this algorithm's outputs up-to-date. More...

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
	Convenience routine to convert from a linear ordering of input connections to a port/connection pair. More...

virtual vtkInformation *	GetInformation ()
	Set/Get the information object associated with this algorithm. More...

virtual void	SetInformation (vtkInformation *)
	Set/Get the information object associated with this algorithm. More...

void	Register (vtkObjectBase *o) override
	Participate in garbage collection. More...

void	UnRegister (vtkObjectBase *o) override
	Participate in garbage collection. More...

virtual void	SetAbortExecute (vtkTypeBool)
	Set/Get the AbortExecute flag for the process object. More...

virtual vtkTypeBool	GetAbortExecute ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOn ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOff ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	SetProgress (double)
	Set/Get the execution progress of a process object. More...

virtual double	GetProgress ()
	Set/Get the execution progress of a process object. More...

void	SetProgressText (const char *ptext)
	Set the current text message associated with the progress state. More...

virtual char *	GetProgressText ()
	Set the current text message associated with the progress state. More...

virtual unsigned long	GetErrorCode ()
	The error code contains a possible error that occurred while reading or writing the file. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	SetInputConnection (vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	AddInputConnection (vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	Update (int port)
	Bring this algorithm's outputs up-to-date. More...

virtual void	Update ()
	Bring this algorithm's outputs up-to-date. More...

virtual void	SetReleaseDataFlag (int)
	Turn release data flag on or off for all output ports. More...

virtual int	GetReleaseDataFlag ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOn ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOff ()
	Turn release data flag on or off for all output ports. More...

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int *	GetUpdateExtent ()
	These functions return the update extent for output ports that use 3D extents. More...

int *	GetUpdateExtent (int port)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

int	GetUpdatePiece ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdatePiece (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel (int port)
	These functions return the update extent for output ports that use piece extents. More...

void	SetProgressObserver (vtkProgressObserver *)
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

virtual vtkProgressObserver *	GetProgressObserver ()
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()
	Turn debugging output on. More...

virtual void	DebugOff ()
	Turn debugging output off. More...

bool	GetDebug ()
	Get the value of the debug flag. More...

void	SetDebug (bool debugFlag)
	Set the value of the debug flag. More...

virtual void	Modified ()
	Update the modification time for this object. More...

virtual vtkMTimeType	GetMTime ()
	Return this object's modified time. More...

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

vtkTypeBool	HasObserver (unsigned long event)

vtkTypeBool	HasObserver (const char *event)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkTypeBool	HasObserver (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method. More...

int	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not. More...

int	InvokeEvent (const char event, void callData)
	This method invokes an event and return whether the event was aborted or not. More...

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string. More...

virtual void	Delete ()
	Delete a VTK object. More...

virtual void	FastDelete ()
	Delete a reference to this object. More...

void	InitializeObjectBase ()

void	Print (ostream &os)
	Print an object to an ostream. More...

int	GetReferenceCount ()
	Return the current reference count of this object. More...

void	SetReferenceCount (int)
	Sets the reference count. More...

void	PrintRevisions (ostream &)
	Legacy. More...

virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

Static Public Member Functions
static vtkTypeBool	IsTypeOf (const char *type)

static vtkMINCImageWriter *	SafeDownCast (vtkObjectBase *o)

static vtkMINCImageWriter *	New ()

Static Public Member Functions inherited from vtkImageWriter
static vtkImageWriter *	New ()

static vtkTypeBool	IsTypeOf (const char *type)

static vtkImageWriter *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageAlgorithm
static vtkTypeBool	IsTypeOf (const char *type)

static vtkImageAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static vtkTypeBool	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
	Keys used to specify input port requirements. More...

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
	This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent. More...

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
	Key that tells the pipeline that a particular algorithm can or cannot handle piece request. More...

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
	If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance(). More...

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	BreakOnError ()
	This method is called when vtkErrorMacro executes. More...

static void	SetGlobalWarningDisplay (int val)
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static int	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class. More...

static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkMINCImageWriter ()

	~vtkMINCImageWriter () override

virtual int	OpenNetCDFFile (const char *filename, int &ncid)

virtual int	CloseNetCDFFile (int ncid)

virtual int	IndexFromDimensionName (const char *dimName)

virtual void	ComputePermutationFromOrientation (int permutation[3], int flip[3])

virtual int	CreateMINCDimensions (vtkImageData input, int timeStep, int dimids)

virtual int	CreateMINCVariables (vtkImageData input, int timeStep, int dimids)

virtual int	WriteMINCFileAttributes (vtkImageData *input, int timeStep)

virtual int	WriteMINCData (vtkImageData *input, int frameNumber, int wholeExt[6], int upExt[6])

virtual void	FindRescale (double &rescaleSlope, double &rescaleIntercept)

virtual void	FindMINCValidRange (double range[2])

int	FillInputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override
	Subclasses can reimplement this method to collect information from their inputs and set information for their outputs. More...

int	RequestUpdateExtent (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override
	Subclasses can reimplement this method to translate the update extent requests from each output port into update extent requests for the input connections. More...

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override
	This is called in response to a REQUEST_DATA request from the executive. More...

Protected Member Functions inherited from vtkImageWriter
	vtkImageWriter ()

	~vtkImageWriter () override

virtual void	RecursiveWrite (int dim, vtkImageData region, vtkInformation inInfo, ostream *file)

virtual void	RecursiveWrite (int dim, vtkImageData cache, vtkImageData data, vtkInformation inInfo, ostream file)

virtual void	WriteFile (ostream file, vtkImageData data, int extent[6], int wExtent[6])

virtual void	WriteFileHeader (ostream , vtkImageData , int[6])

virtual void	WriteFileTrailer (ostream , vtkImageData )

virtual void	MemoryWrite (int, vtkImageData , int[6], vtkInformation )

Protected Member Functions inherited from vtkImageAlgorithm
	vtkImageAlgorithm ()

	~vtkImageAlgorithm () override

virtual void	CopyInputArrayAttributesToOutput (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	Convenience method to copy the scalar type and number of components from the input data to the output data. More...

virtual void	ExecuteDataWithInformation (vtkDataObject output, vtkInformation outInfo)
	This is a convenience method that is implemented in many subclasses instead of RequestData. More...

virtual void	CopyAttributeData (vtkImageData in, vtkImageData out, vtkInformationVector **inputVector)
	Copy the other point and cell data. More...

virtual void	ExecuteData (vtkDataObject *output)
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	Execute ()
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	AllocateOutputData (vtkImageData out, vtkInformation outInfo, int *uExtent)
	Allocate the output data. More...

virtual vtkImageData *	AllocateOutputData (vtkDataObject out, vtkInformation outInfo)
	Allocate the output data. More...

int	FillOutputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm () override

virtual void	SetNumberOfInputPorts (int n)
	Set the number of input ports used by the algorithm. More...

virtual void	SetNumberOfOutputPorts (int n)
	Set the number of output ports provided by the algorithm. More...

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
	Get the assocition of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
	This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector. More...

virtual vtkExecutive *	CreateDefaultExecutive ()
	Create a default executive. More...

void	ReportReferences (vtkGarbageCollector *) override

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
	Replace the Nth connection on the given input port. More...

virtual void	SetNumberOfInputConnections (int port, int n)
	Set the number of input connections on the given input port. More...

void	SetInputDataInternal (int port, vtkDataObject *input)
	These methods are used by subclasses to implement methods to set data objects directly as input. More...

void	AddInputDataInternal (int port, vtkDataObject *input)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

int	GetInputArrayAssociation (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

virtual void	SetErrorCode (unsigned long)
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Member Functions inherited from vtkObject
	vtkObject ()

	~vtkObject () override

void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=nullptr)
	These methods allow a command to exclusively grab all events. More...

void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events. More...

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
int	MINCImageType

int	MINCImageTypeSigned

int	MINCImageMinMaxDims

vtkMatrix4x4 *	DirectionCosines

double	RescaleSlope

double	RescaleIntercept

vtkTypeBool	StrictValidation

int	DataUpdateExtent [6]

int	FileDataType

double	FileValidRange [2]

double	InternalRescaleSlope

double	InternalRescaleIntercept

int	ComputeValidRangeFromScalarRange

vtkStringArray *	FileDimensionNames

vtkMINCImageAttributes *	ImageAttributes

int	Permutation [3]

int	Flip [3]

int	MismatchedInputs

int	MINCFileId

char *	HistoryAddition

Protected Attributes inherited from vtkImageWriter
int	FileDimensionality

char *	FilePrefix

char *	FilePattern

char *	FileName

int	FileNumber

int	FileLowerLeft

char *	InternalFileName

size_t	InternalFileNameSize

vtkTypeUBool	WriteToMemory

int	MinimumFileNumber

int	MaximumFileNumber

int	FilesDeleted

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
vtkTypeBool	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

A writer for MINC files.

MINC is a NetCDF-based medical image file format that was developed at the Montreal Neurological Institute in 1992. The data is written slice-by-slice, and this writer is therefore suitable for streaming MINC data that is larger than the memory size through VTK. This writer can also produce files with up to 4 dimensions, where the fourth dimension is provided by using AddInput() to specify multiple input data sets. If you want to set header information for the file, you must supply a vtkMINCImageAttributes

See also: vtkMINCImageReader vtkMINCImageAttributes

Thanks:: Thanks to David Gobbi for writing this class and Atamai Inc. for contributing it to VTK.

Tests:: vtkMINCImageWriter (Tests)

Definition at line 85 of file vtkMINCImageWriter.h.

Member Typedef Documentation

typedef vtkImageWriter vtkMINCImageWriter::Superclass

Definition at line 88 of file vtkMINCImageWriter.h.

Constructor & Destructor Documentation

vtkMINCImageWriter::vtkMINCImageWriter ( )

protected

vtkMINCImageWriter::~vtkMINCImageWriter ( )

overrideprotected

Member Function Documentation

static vtkTypeBool vtkMINCImageWriter::IsTypeOf ( const char * type )

static

virtual vtkTypeBool vtkMINCImageWriter::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkImageWriter.

static vtkMINCImageWriter* vtkMINCImageWriter::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkMINCImageWriter::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkImageWriter.

vtkMINCImageWriter* vtkMINCImageWriter::NewInstance ( ) const

static vtkMINCImageWriter* vtkMINCImageWriter::New ( )

static

void vtkMINCImageWriter::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkImageWriter.

virtual const char* vtkMINCImageWriter::GetFileExtensions ( )

inlinevirtual

Get the entension for this file format.

Definition at line 96 of file vtkMINCImageWriter.h.

virtual const char* vtkMINCImageWriter::GetDescriptiveName ( )

inlinevirtual

Get the name of this file format.

Definition at line 102 of file vtkMINCImageWriter.h.

void vtkMINCImageWriter::SetFileName ( const char * name )

overridevirtual

Set the file name.

Reimplemented from vtkImageWriter.

void vtkMINCImageWriter::Write ( )

overridevirtual

Write the data.

This will attempt to stream the data slice-by-slice through the pipeline and out to the file, unless the whole extent of the input has already been updated.

Reimplemented from vtkImageWriter.

virtual void vtkMINCImageWriter::SetDirectionCosines ( vtkMatrix4x4 * matrix )

virtual

Set a matrix that describes the orientation of the data.

The three columns of this matrix should give the unit-vector directions for the VTK x, y and z dimensions respectively. The writer will use this information to determine how to map the VTK dimensions to the canonical MINC dimensions, and if necessary, the writer will re-order one or more dimensions back-to-front to ensure that no MINC dimension ends up with a direction cosines vector whose dot product with the canonical unit vector for that dimension is negative.

virtual vtkMatrix4x4* vtkMINCImageWriter::GetDirectionCosines ( )

virtual

Set a matrix that describes the orientation of the data.

The three columns of this matrix should give the unit-vector directions for the VTK x, y and z dimensions respectively. The writer will use this information to determine how to map the VTK dimensions to the canonical MINC dimensions, and if necessary, the writer will re-order one or more dimensions back-to-front to ensure that no MINC dimension ends up with a direction cosines vector whose dot product with the canonical unit vector for that dimension is negative.

virtual void vtkMINCImageWriter::SetRescaleSlope ( double )

virtual

Set the slope and intercept for rescaling the intensities.

The default values are zero, which indicates to the reader that no rescaling is to be performed.

virtual double vtkMINCImageWriter::GetRescaleSlope ( )

virtual

Set the slope and intercept for rescaling the intensities.

The default values are zero, which indicates to the reader that no rescaling is to be performed.

virtual void vtkMINCImageWriter::SetRescaleIntercept ( double )

virtual

Set the slope and intercept for rescaling the intensities.

The default values are zero, which indicates to the reader that no rescaling is to be performed.

virtual double vtkMINCImageWriter::GetRescaleIntercept ( )

virtual

Set the slope and intercept for rescaling the intensities.

The default values are zero, which indicates to the reader that no rescaling is to be performed.

virtual void vtkMINCImageWriter::SetImageAttributes ( vtkMINCImageAttributes * attributes )

virtual

Set the image attributes, which contain patient information and other useful metadata.

virtual vtkMINCImageAttributes* vtkMINCImageWriter::GetImageAttributes ( )

inlinevirtual

Set the image attributes, which contain patient information and other useful metadata.

Definition at line 152 of file vtkMINCImageWriter.h.

virtual void vtkMINCImageWriter::SetStrictValidation ( vtkTypeBool )

virtual

Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard.

virtual void vtkMINCImageWriter::StrictValidationOn ( )

virtual

Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard.

virtual void vtkMINCImageWriter::StrictValidationOff ( )

virtual

Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard.

virtual vtkTypeBool vtkMINCImageWriter::GetStrictValidation ( )

virtual

Set whether to validate that all variable attributes that have been set are ones that are listed in the MINC standard.

virtual void vtkMINCImageWriter::SetHistoryAddition ( const char * )

virtual

Set a string value to append to the history of the file.

This string should describe, briefly, how the file was processed.

virtual char* vtkMINCImageWriter::GetHistoryAddition ( )

virtual

Set a string value to append to the history of the file.

This string should describe, briefly, how the file was processed.

virtual int vtkMINCImageWriter::OpenNetCDFFile	(	const char *	filename,
		int &	ncid
	)

protectedvirtual

virtual int vtkMINCImageWriter::CloseNetCDFFile ( int ncid )

protectedvirtual

virtual int vtkMINCImageWriter::IndexFromDimensionName ( const char * dimName )

protectedvirtual

virtual void vtkMINCImageWriter::ComputePermutationFromOrientation	(	int	permutation[3],
		int	flip[3]
	)

protectedvirtual

virtual int vtkMINCImageWriter::CreateMINCDimensions	(	vtkImageData *	input,
		int	timeStep,
		int *	dimids
	)

protectedvirtual

virtual int vtkMINCImageWriter::CreateMINCVariables	(	vtkImageData *	input,
		int	timeStep,
		int *	dimids
	)

protectedvirtual

virtual int vtkMINCImageWriter::WriteMINCFileAttributes	(	vtkImageData *	input,
		int	timeStep
	)

protectedvirtual

virtual int vtkMINCImageWriter::WriteMINCData	(	vtkImageData *	input,
		int	frameNumber,
		int	wholeExt[6],
		int	upExt[6]
	)

protectedvirtual

virtual void vtkMINCImageWriter::FindRescale	(	double &	rescaleSlope,
		double &	rescaleIntercept
	)

protectedvirtual

virtual void vtkMINCImageWriter::FindMINCValidRange ( double range[2] )

protectedvirtual

int vtkMINCImageWriter::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotectedvirtual

These method should be reimplemented by subclasses that have more than a single input or single output.

See vtkAlgorithm for more information.

Reimplemented from vtkImageAlgorithm.

int vtkMINCImageWriter::RequestInformation	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotectedvirtual

Subclasses can reimplement this method to collect information from their inputs and set information for their outputs.

Reimplemented from vtkImageAlgorithm.

int vtkMINCImageWriter::RequestUpdateExtent	(	vtkInformation *	,
		vtkInformationVector **	,
		vtkInformationVector *
	)

overrideprotectedvirtual

Subclasses can reimplement this method to translate the update extent requests from each output port into update extent requests for the input connections.

Reimplemented from vtkImageAlgorithm.

int vtkMINCImageWriter::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotectedvirtual

This is called in response to a REQUEST_DATA request from the executive.

Subclasses should override either this method or the ExecuteDataWithInformation method in order to generate data for their outputs. For images, the output arrays will already be allocated, so all that is necessary is to fill in the voxel values.

Reimplemented from vtkImageWriter.

Member Data Documentation

int vtkMINCImageWriter::MINCImageType

protected

Definition at line 179 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::MINCImageTypeSigned

protected

Definition at line 180 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::MINCImageMinMaxDims

protected

Definition at line 181 of file vtkMINCImageWriter.h.

vtkMatrix4x4* vtkMINCImageWriter::DirectionCosines

protected

Definition at line 183 of file vtkMINCImageWriter.h.

double vtkMINCImageWriter::RescaleSlope

protected

Definition at line 184 of file vtkMINCImageWriter.h.

double vtkMINCImageWriter::RescaleIntercept

protected

Definition at line 185 of file vtkMINCImageWriter.h.

vtkTypeBool vtkMINCImageWriter::StrictValidation

protected

Definition at line 186 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::DataUpdateExtent[6]

protected

Definition at line 187 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::FileDataType

protected

Definition at line 189 of file vtkMINCImageWriter.h.

double vtkMINCImageWriter::FileValidRange[2]

protected

Definition at line 190 of file vtkMINCImageWriter.h.

double vtkMINCImageWriter::InternalRescaleSlope

protected

Definition at line 191 of file vtkMINCImageWriter.h.

double vtkMINCImageWriter::InternalRescaleIntercept

protected

Definition at line 192 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::ComputeValidRangeFromScalarRange

protected

Definition at line 194 of file vtkMINCImageWriter.h.

vtkStringArray* vtkMINCImageWriter::FileDimensionNames

protected

Definition at line 196 of file vtkMINCImageWriter.h.

vtkMINCImageAttributes* vtkMINCImageWriter::ImageAttributes

protected

Definition at line 198 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::Permutation[3]

protected

Definition at line 200 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::Flip[3]

protected

Definition at line 201 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::MismatchedInputs

protected

Definition at line 203 of file vtkMINCImageWriter.h.

int vtkMINCImageWriter::MINCFileId

protected

Definition at line 204 of file vtkMINCImageWriter.h.

char* vtkMINCImageWriter::HistoryAddition

protected

Definition at line 206 of file vtkMINCImageWriter.h.

The documentation for this class was generated from the following file:

/home/demarle/Source/VTK/release/8.2/build/Utilities/Doxygen/dox/IO/MINC/vtkMINCImageWriter.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation